Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008979.1 Corchorus olitorius cultivar O-4 contig09007, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 615

Length: 1026
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.31


Found at i:603 original size:13 final size:13

Alignment explanation


    Indices: 587--615  Score: 58
    Period size: 13  Copynumber: 2.2  Consensus size: 13

        577 TAAGGACTAA

                         
        587 ATCACTATTATTT
          1 ATCACTATTATTT

                         
        600 ATCACTATTATTT
          1 ATCACTATTATTT

               
        613 ATC
          1 ATC

        616 TTGTTATGTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.31, C:0.17, G:0.00, T:0.52


Consensus pattern (13 bp):   
ATCACTATTATTT
Done.