Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008993.1 Corchorus olitorius cultivar O-4 contig09021, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 627

Length: 1045
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33


Found at i:94 original size:24 final size:24

Alignment explanation


    Indices: 67--113  Score: 76
    Period size: 24  Copynumber: 2.0  Consensus size: 24

         57 TTTTACAAAA

                *            *      
         67 ATTGTCCCGAAAGGTTTTTCCTCT
          1 ATTGACCCGAAAGGTTTATCCTCT

                                   
         91 ATTGACCCGAAAGGTTTATCCTC
          1 ATTGACCCGAAAGGTTTATCCTC

        114 AATTTTTTGC


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  24   21  1.00

ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36


Consensus pattern (24 bp):   
ATTGACCCGAAAGGTTTATCCTCT
Done.