Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009000.1 Corchorus olitorius cultivar O-4 contig09028, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 952

Length: 1587
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32


Found at i:1147 original size:11 final size:11

Alignment explanation


    Indices: 1131--1168  Score: 58
    Period size: 11  Copynumber: 3.5  Consensus size: 11

       1121 AGTAGGGTCC

                       
       1131 TTCCTAGCTCT
          1 TTCCTAGCTCT

                      *
       1142 TTCCTAGCTCA
          1 TTCCTAGCTCT

                     * 
       1153 TTCCTAGCTTT
          1 TTCCTAGCTCT

                 
       1164 TTCCT
          1 TTCCT

       1169 TTACCCTTGG


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  11   24  1.00

ACGTcount: A:0.11, C:0.34, G:0.08, T:0.47


Consensus pattern (11 bp):   
TTCCTAGCTCT
Done.