Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009002.1 Corchorus olitorius cultivar O-4 contig09030, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 628

Length: 1048
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33


Found at i:1023 original size:13 final size:13

Alignment explanation


    Indices: 1005--1033  Score: 58
    Period size: 13  Copynumber: 2.2  Consensus size: 13

        995 AACATAACAA

                         
       1005 GATAAATAATAGT
          1 GATAAATAATAGT

                         
       1018 GATAAATAATAGT
          1 GATAAATAATAGT

               
       1031 GAT
          1 GAT

       1034 TTAGTCCTTA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.52, C:0.00, G:0.17, T:0.31


Consensus pattern (13 bp):   
GATAAATAATAGT
Done.