Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009005.1 Corchorus olitorius cultivar O-4 contig09033, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 798

Length: 1331
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33


Found at i:87 original size:27 final size:27

Alignment explanation


    Indices: 57--110  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

         47 CCCATTTAAA

                                       
         57 AAAGGTAGGAAAACGGGAATGTAAGGT
          1 AAAGGTAGGAAAACGGGAATGTAAGGT

                                       
         84 AAAGGTAGGAAAACGGGAATGTAAGGT
          1 AAAGGTAGGAAAACGGGAATGTAAGGT

        111 CGGTCAGTCG


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.44, C:0.04, G:0.37, T:0.15


Consensus pattern (27 bp):   
AAAGGTAGGAAAACGGGAATGTAAGGT
Done.