Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000901.1 Corchorus olitorius cultivar O-4 contig00901, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 738

Length: 1231
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34


Found at i:901 original size:13 final size:13

Alignment explanation


    Indices: 883--907  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        873 TTCAATGTTC

                         
        883 TAAATATTATTTA
          1 TAAATATTATTTA

                        
        896 TAAATATTATTT
          1 TAAATATTATTT

        908 GGAATTTCAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56


Consensus pattern (13 bp):   
TAAATATTATTTA
Done.