Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009017.1 Corchorus olitorius cultivar O-4 contig09045, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1167
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27


Found at i:125 original size:18 final size:18

Alignment explanation


    Indices: 102--137  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

         92 CAAGAACCAT

                              
        102 TAGAAAGAAAATCACTTA
          1 TAGAAAGAAAATCACTTA

                              
        120 TAGAAAGAAAATCACTTA
          1 TAGAAAGAAAATCACTTA

        138 CACGGGTATT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.56, C:0.11, G:0.11, T:0.22


Consensus pattern (18 bp):   
TAGAAAGAAAATCACTTA
Done.