Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000902.1 Corchorus olitorius cultivar O-4 contig00902, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1078
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32


Found at i:826 original size:30 final size:30

Alignment explanation


    Indices: 746--826  Score: 71
    Period size: 30  Copynumber: 2.7  Consensus size: 30

        736 ATTTTTCTTT

                                           
        746 TCAACTTTC-CAAACCTTACCATCATCTTCC
          1 TCAACTTTCAC-AACCTTACCATCATCTTCC

                           *            *  * 
        776 TCAA-TTCTCACAA-ATCTACCATTC-TTTTTC
          1 TCAACTT-TCACAACCT-TACCA-TCATCTTCC

                                 
        806 TCAACTTTCACAACCTTACCA
          1 TCAACTTTCACAACCTTACCA

        827 AACTTCTCAA


Statistics
Matches: 41,  Mismatches: 4, Indels: 12
        0.72            0.07        0.21

Matches are distributed among these distances:
  29    3  0.07
  30   32  0.78
  31    6  0.15

ACGTcount: A:0.28, C:0.36, G:0.00, T:0.36


Consensus pattern (30 bp):   
TCAACTTTCACAACCTTACCATCATCTTCC
Done.