Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009024.1 Corchorus olitorius cultivar O-4 contig09052, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 614

Length: 1024
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29


Found at i:236 original size:21 final size:22

Alignment explanation


    Indices: 210--251  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 22

        200 GTCGACAGAA

                                  
        210 AAAAATAAAGAAA-AGAAATAG
          1 AAAAATAAAGAAATAGAAATAG

                                 
        231 AAAAATAAAGAAATAGAAATA
          1 AAAAATAAAGAAATAGAAATA

        252 TTAAATAGAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  21   13  0.65
  22    7  0.35

ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12


Consensus pattern (22 bp):   
AAAAATAAAGAAATAGAAATAG

Done.