Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009025.1 Corchorus olitorius cultivar O-4 contig09053, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 809

Length: 1349
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1278 original size:19 final size:20

Alignment explanation


    Indices: 1247--1285  Score: 71
    Period size: 19  Copynumber: 2.0  Consensus size: 20

       1237 GTTTGATAAA

                                
       1247 TCTTCTGGAATACTCATACT
          1 TCTTCTGGAATACTCATACT

                                
       1267 TCTTCT-GAATACTCATACT
          1 TCTTCTGGAATACTCATACT

       1286 CAGGCTAATC


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  19   13  0.68
  20    6  0.32

ACGTcount: A:0.26, C:0.26, G:0.08, T:0.41


Consensus pattern (20 bp):   
TCTTCTGGAATACTCATACT
Done.