Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000903.1 Corchorus olitorius cultivar O-4 contig00903, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 636

Length: 1060
ACGTcount: A:0.42, C:0.13, G:0.14, T:0.32


Found at i:571 original size:15 final size:15

Alignment explanation


    Indices: 548--577  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        538 TTCAGAAATT

                *          
        548 AATATATTATTAAAA
          1 AATAAATTATTAAAA

                           
        563 AATAAATTATTAAAA
          1 AATAAATTATTAAAA

        578 GAAACCAACA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37


Consensus pattern (15 bp):   
AATAAATTATTAAAA

Found at i:615 original size:18 final size:18

Alignment explanation


    Indices: 592--634  Score: 59
    Period size: 19  Copynumber: 2.3  Consensus size: 18

        582 CCAACAAGAG

                  *           
        592 AAATCACTCTTGAAGCGT
          1 AAATCAATCTTGAAGCGT

                            *  
        610 AAATCAAATCTTGAAGTGT
          1 AAATC-AATCTTGAAGCGT

                  
        629 AAATCA
          1 AAATCA

        635 GATCAAAGGT


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  18    6  0.27
  19   16  0.73

ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28


Consensus pattern (18 bp):   
AAATCAATCTTGAAGCGT
Done.