Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009031.1 Corchorus olitorius cultivar O-4 contig09059, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 718

Length: 1198
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29


Found at i:816 original size:14 final size:14

Alignment explanation


    Indices: 797--827  Score: 62
    Period size: 14  Copynumber: 2.2  Consensus size: 14

        787 CAGCTCTAAC

                          
        797 AACAGAAAAAAGTT
          1 AACAGAAAAAAGTT

                          
        811 AACAGAAAAAAGTT
          1 AACAGAAAAAAGTT

               
        825 AAC
          1 AAC

        828 CGGACCTGGG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.65, C:0.10, G:0.13, T:0.13


Consensus pattern (14 bp):   
AACAGAAAAAAGTT
Done.