Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009034.1 Corchorus olitorius cultivar O-4 contig09062, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 793

Length: 1322
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32


Found at i:542 original size:21 final size:21

Alignment explanation


    Indices: 518--572  Score: 83
    Period size: 21  Copynumber: 2.6  Consensus size: 21

        508 GGCTTGGAAT

                                 
        518 GGTGATGGCACGGGCATAACC
          1 GGTGATGGCACGGGCATAACC

                *          *     
        539 GGTGGTGGCACGGGCTTAACC
          1 GGTGATGGCACGGGCATAACC

                   *     
        560 GGTGATGTCACGG
          1 GGTGATGGCACGG

        573 TGAATGGCCG


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   30  1.00

ACGTcount: A:0.18, C:0.22, G:0.42, T:0.18


Consensus pattern (21 bp):   
GGTGATGGCACGGGCATAACC
Done.