Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009035.1 Corchorus olitorius cultivar O-4 contig09063, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 659

Length: 1099
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29


Found at i:922 original size:26 final size:26

Alignment explanation


    Indices: 890--941  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        880 CTAGCAGCAG

                                      
        890 CCAGAGCTCGATCGGGTGCCATAGCC
          1 CCAGAGCTCGATCGGGTGCCATAGCC

                                      
        916 CCAGAGCTCGATCGGGTGCCATAGCC
          1 CCAGAGCTCGATCGGGTGCCATAGCC

        942 AATGACCCCC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.19, C:0.35, G:0.31, T:0.15


Consensus pattern (26 bp):   
CCAGAGCTCGATCGGGTGCCATAGCC
Done.