Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009039.1 Corchorus olitorius cultivar O-4 contig09067, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 643

Length: 1072
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40


Found at i:281 original size:154 final size:154

Alignment explanation


    Indices: 1--1071  Score: 1653
    Period size: 154  Copynumber: 6.9  Consensus size: 154

                                     **                                      
          1 GCTTTTCTTTCCATTGTTTATGGCCCGACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGT
          1 GCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGT

                       *         *                   *                       
         66 TTTTAGCTCATATGGAACACTCGTTATTTTGGGCCTATCGGAGACCATTAGTGACGTTTTGAATC
         66 TTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATC

             *                      
        131 GCCTTCGATTTGGCAAACCTCAAT
        131 GTCTTCGATTTGGCAAACCTCAAT

                        *            **                                      
        155 GCTTTTCTTTCCTTTGTTTATGGCCCGACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGT
          1 GCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGT

                                                                             
        220 TTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATC
         66 TTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATC

                                  *  
        285 GTCTTCGATTTGGC-AACCTTCGAT
        131 GTCTTCGATTTGGCAAACC-TCAAT

                       *                   *         *           *           
        309 GCTTTTCTTTCTATTGTTTATGGCCTAACTAAAATCATTTTAGTGAGATTAGTACACTGTGAAGT
          1 GCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGT

                        *                     *       *                      
        374 TTTTAGCGTCATATGGAACACTTGTTATTTTGGGTCTATCGGAGACCATTAGTGACGTTTTGAAT
         66 TTTTAGC-TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAAT

                                     
        439 CGTCTTCGATTTGGCAAACCTCAAT
        130 CGTCTTCGATTTGGCAAACCTCAAT

                          ** *  * *                        *                 
        464 GCTTTTCTTTCCATCATGTACGACCTAACTATAATCATTTTGGTGAGGTTAGTCCACTGTGAAGT
          1 GCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGT

                                  *           *     *                        
        529 TTTTAGCTCATTTGGAACACTTCTTATTTTGGGCTTATCGAGGACCATTAGTGACGTTTTGAATC
         66 TTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATC

                                  *  
        594 GTCTTCGATTTGGC-AACCTTCGAT
        131 GTCTTCGATTTGGCAAACC-TCAAT

              *        *       *                                             
        618 GCCTTTCTTTCAATTGTTTGTGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGT
          1 GCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGT

                       *                     *           *                   
        683 TTTTAGCTCATATGGAACACTTGTTATTTTGGGGCTATCGGGGACTATTAGTGACGTTTTGAATC
         66 TTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATC

                                     
        748 GTCTTCGATTTGGCAAACCTCAAAT
        131 GTCTTCGATTTGGCAAACCTC-AAT

                                  *        *                  *              
        773 -CTTTTCTTTCCATTGTTTATGTCCTAACTACAATCATTTTGGTGAGATTTGTCCACTGTGAAGT
          1 GCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGT

                    *                      **       *  *           *        *
        837 TTTTAGCTTATTTGGAACACTTGTTATTTTGTTCCTATCGAGGCCCATTAGTGACATTTTGAATA
         66 TTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATC

                                    
        902 GTCTTCGATTTGGCAAACCTCAAT
        131 GTCTTCGATTTGGCAAACCTCAAT

                                     **                      *               
        926 GCTTTTCTTTCCATTGTTTATGGCCCGACTATAATCATTTTGGTGAGATAAGTCCACTGTGAAGT
          1 GCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGT

                                                                             
        991 TTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATC
         66 TTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATC

            * *             
       1056 ATATTCGATTTGGCAA
        131 GTCTTCGATTTGGCAA

       1072 C


Statistics
Matches: 829,  Mismatches: 81, Indels: 14
        0.90            0.09        0.02

Matches are distributed among these distances:
 153   11  0.01
 154  673  0.81
 155  141  0.17
 156    4  0.00

ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40


Consensus pattern (154 bp):   
GCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGT
TTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATC
GTCTTCGATTTGGCAAACCTCAAT

Done.