Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000904.1 Corchorus olitorius cultivar O-4 contig00904, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 819

Length: 1366
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.32


Found at i:316 original size:30 final size:30

Alignment explanation


    Indices: 280--337  Score: 107
    Period size: 30  Copynumber: 1.9  Consensus size: 30

        270 TTTGAGAGGA

                                          
        280 AGTCGTTCAGTCTCTAGGGGATGCCCAGGG
          1 AGTCGTTCAGTCTCTAGGGGATGCCCAGGG

                           *            
        310 AGTCGTTCAGTCTCTGGGGGATGCCCAG
          1 AGTCGTTCAGTCTCTAGGGGATGCCCAG

        338 CTACTGCTTT


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  30   27  1.00

ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24


Consensus pattern (30 bp):   
AGTCGTTCAGTCTCTAGGGGATGCCCAGGG
Done.