Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009046.1 Corchorus olitorius cultivar O-4 contig09074, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 610

Length: 1017
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:529 original size:42 final size:43

Alignment explanation


    Indices: 478--571  Score: 129
    Period size: 45  Copynumber: 2.2  Consensus size: 43

        468 AGTGCATTAT

                              *     *                  
        478 CTAA-ATTCTA-CTCTATCTCTAGGTAATTCATCAAAATAAAG
          1 CTAATATTCTACCTCTATATCTAGATAATTCATCAAAATAAAG

              *                                          
        519 CTGATATTCTACTCCTCTATATCTAGATAATTCATCAAAATAAAG
          1 CTAATATTCTA--CCTCTATATCTAGATAATTCATCAAAATAAAG

                    
        564 CTAATATT
          1 CTAATATT

        572 AATTGTTGCT


Statistics
Matches: 45,  Mismatches: 4, Indels: 4
        0.85            0.08        0.08

Matches are distributed among these distances:
  41    3  0.07
  42    6  0.13
  45   36  0.80

ACGTcount: A:0.38, C:0.19, G:0.06, T:0.36


Consensus pattern (43 bp):   
CTAATATTCTACCTCTATATCTAGATAATTCATCAAAATAAAG
Done.