Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009059.1 Corchorus olitorius cultivar O-4 contig09087, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 876

Length: 1460
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29


Found at i:692 original size:21 final size:21

Alignment explanation


    Indices: 668--780  Score: 149
    Period size: 21  Copynumber: 5.4  Consensus size: 21

        658 CTTAGGCATT

                         *       
        668 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                   **            
        689 TCCAATGCTCTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *          * 
        710 TCCAATGAACTTGGAACCTGC
          1 TCCAATGAGCTTGGAACCTTC

                                  
        731 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                                  
        752 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    
        773 TCCAATGA
          1 TCCAATGA

        781 ACTTCTAGCA


Statistics
Matches: 83,  Mismatches: 8, Indels: 2
        0.89            0.09        0.02

Matches are distributed among these distances:
  20    2  0.02
  21   81  0.98

ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC

Done.