Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009068.1 Corchorus olitorius cultivar O-4 contig09096, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 714

Length: 1191
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.28


Found at i:338 original size:24 final size:24

Alignment explanation


    Indices: 306--354  Score: 98
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        296 CTAATCGGGT

                                    
        306 TTCAGGTATAGATTTCACGTAATC
          1 TTCAGGTATAGATTTCACGTAATC

                                    
        330 TTCAGGTATAGATTTCACGTAATC
          1 TTCAGGTATAGATTTCACGTAATC

             
        354 T
          1 T

        355 GGGTACTCTT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39


Consensus pattern (24 bp):   
TTCAGGTATAGATTTCACGTAATC
Done.