Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009082.1 Corchorus olitorius cultivar O-4 contig09110, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 666

Length: 1110
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.35


Found at i:520 original size:12 final size:12

Alignment explanation


    Indices: 503--528  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        493 TAATATCACG

                        
        503 AATATTATATAT
          1 AATATTATATAT

                        
        515 AATATTATATAT
          1 AATATTATATAT

              
        527 AA
          1 AA

        529 ATAACACAAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46


Consensus pattern (12 bp):   
AATATTATATAT

Found at i:593 original size:17 final size:17

Alignment explanation


    Indices: 571--604  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        561 CCCTGCATCT

                      *      
        571 TCAAATAACTGGATAGA
          1 TCAAATAACTCGATAGA

                             
        588 TCAAATAACTCGATAGA
          1 TCAAATAACTCGATAGA

        605 ATAGATTCGC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.47, C:0.15, G:0.15, T:0.24


Consensus pattern (17 bp):   
TCAAATAACTCGATAGA
Done.