Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009085.1 Corchorus olitorius cultivar O-4 contig09113, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 730

Length: 1217
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:76 original size:13 final size:12

Alignment explanation


    Indices: 58--90  Score: 50
    Period size: 13  Copynumber: 2.8  Consensus size: 12

         48 GAATTTACGG

                         
         58 GAACAAATAAATA
          1 GAACAAATAAA-A

                        
         71 GAACAAATAAAA
          1 GAACAAATAAAA

                     
         83 -AACAAATA
          1 GAACAAATA

         91 GCGGTAGGGA


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  11    8  0.40
  12    1  0.05
  13   11  0.55

ACGTcount: A:0.73, C:0.09, G:0.06, T:0.12


Consensus pattern (12 bp):   
GAACAAATAAAA

Found at i:910 original size:14 final size:14

Alignment explanation


    Indices: 891--918  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

        881 TTTTTTTTCT

                          
        891 AAAAATTAGGTTCA
          1 AAAAATTAGGTTCA

                          
        905 AAAAATTAGGTTCA
          1 AAAAATTAGGTTCA

        919 GTGGACAAAG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29


Consensus pattern (14 bp):   
AAAAATTAGGTTCA
Done.