Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009086.1 Corchorus olitorius cultivar O-4 contig09114, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 780

Length: 1300
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.28


Found at i:492 original size:16 final size:16

Alignment explanation


    Indices: 471--502  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

        461 GGGGCAATAG

                            
        471 GAGACAATTCTTTTGT
          1 GAGACAATTCTTTTGT

                            
        487 GAGACAATTCTTTTGT
          1 GAGACAATTCTTTTGT

        503 CTTCTCAACT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44


Consensus pattern (16 bp):   
GAGACAATTCTTTTGT
Done.