Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009091.1 Corchorus olitorius cultivar O-4 contig09119, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 814

Length: 1357
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.30


Found at i:875 original size:21 final size:21

Alignment explanation


    Indices: 849--890  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        839 GGCATCTTAG

                                 
        849 GCAACTCCGATGAGCTTGAAA
          1 GCAACTCCGATGAGCTTGAAA

                   *             
        870 GCAACTCGGATGAGCTTGAAA
          1 GCAACTCCGATGAGCTTGAAA

        891 CTTCTTCCTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.33, C:0.21, G:0.26, T:0.19


Consensus pattern (21 bp):   
GCAACTCCGATGAGCTTGAAA
Done.