Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009099.1 Corchorus olitorius cultivar O-4 contig09127, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 695

Length: 1159
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.34


Found at i:609 original size:21 final size:21

Alignment explanation


    Indices: 585--627  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        575 AATTAACAAT

                                 
        585 TAAGTAGAGTCTTAAGGCAAA
          1 TAAGTAGAGTCTTAAGGCAAA

                                 
        606 TAAGTAGAGTCTTAAGGCAAA
          1 TAAGTAGAGTCTTAAGGCAAA

             
        627 T
          1 T

        628 TCTTTTCTTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.42, C:0.09, G:0.23, T:0.26


Consensus pattern (21 bp):   
TAAGTAGAGTCTTAAGGCAAA
Done.