Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009100.1 Corchorus olitorius cultivar O-4 contig09128, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 602

Length: 1004
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34


Found at i:529 original size:21 final size:21

Alignment explanation


    Indices: 501--563  Score: 117
    Period size: 21  Copynumber: 3.0  Consensus size: 21

        491 TAGAACTACT

                                 
        501 ACTCTTAGAACCAGAAATAAA
          1 ACTCTTAGAACCAGAAATAAA

               *                 
        522 ACTTTTAGAACCAGAAATAAA
          1 ACTCTTAGAACCAGAAATAAA

                                 
        543 ACTCTTAGAACCAGAAATAAA
          1 ACTCTTAGAACCAGAAATAAA

        564 TAGGCTTACC


Statistics
Matches: 40,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   40  1.00

ACGTcount: A:0.52, C:0.17, G:0.10, T:0.21


Consensus pattern (21 bp):   
ACTCTTAGAACCAGAAATAAA
Done.