Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009106.1 Corchorus olitorius cultivar O-4 contig09134, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 663

Length: 1106
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22


Found at i:664 original size:23 final size:23

Alignment explanation


    Indices: 634--680  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        624 CACAAAACCA

                                   
        634 TAGTCAAGAAGAAAACGACTCAG
          1 TAGTCAAGAAGAAAACGACTCAG

                                   
        657 TAGTCAAGAAGAAAACGACTCAG
          1 TAGTCAAGAAGAAAACGACTCAG

             
        680 T
          1 T

        681 TCTTGATACC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.47, C:0.17, G:0.21, T:0.15


Consensus pattern (23 bp):   
TAGTCAAGAAGAAAACGACTCAG
Done.