Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009112.1 Corchorus olitorius cultivar O-4 contig09140, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 746

Length: 1244
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.33


Found at i:301 original size:105 final size:105

Alignment explanation


    Indices: 119--335  Score: 425
    Period size: 105  Copynumber: 2.1  Consensus size: 105

        109 CCCACACTAA

                 *                                                           
        119 ATCTTTACTAGTCCCTAGCAAACTAGTGTAGAAAACTATGAACGTACTAAATTTGAATACCTAAA
          1 ATCTTAACTAGTCCCTAGCAAACTAGTGTAGAAAACTATGAACGTACTAAATTTGAATACCTAAA

                                                    
        184 AACAACCCTACAATCCTAAACTAATGCAAATCAAAATTTC
         66 AACAACCCTACAATCCTAAACTAATGCAAATCAAAATTTC

                                                                             
        224 ATCTTAACTAGTCCCTAGCAAACTAGTGTAGAAAACTATGAACGTACTAAATTTGAATACCTAAA
          1 ATCTTAACTAGTCCCTAGCAAACTAGTGTAGAAAACTATGAACGTACTAAATTTGAATACCTAAA

                                                    
        289 AACAACCCTACAATCCTAAACTAATGCAAATCAAAATTTC
         66 AACAACCCTACAATCCTAAACTAATGCAAATCAAAATTTC

                   
        329 ATCTTAA
          1 ATCTTAA

        336 TTTAAACTTT


Statistics
Matches: 111,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 105  111  1.00

ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27


Consensus pattern (105 bp):   
ATCTTAACTAGTCCCTAGCAAACTAGTGTAGAAAACTATGAACGTACTAAATTTGAATACCTAAA
AACAACCCTACAATCCTAAACTAATGCAAATCAAAATTTC
Done.