Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009114.1 Corchorus olitorius cultivar O-4 contig09142, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 652

Length: 1088
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.28


Found at i:552 original size:24 final size:24

Alignment explanation


    Indices: 520--567  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        510 TTAGATCAGC

                                    
        520 GAAATCAGCATGACGGGTATTGTT
          1 GAAATCAGCATGACGGGTATTGTT

                                    
        544 GAAATCAGCATGACGGGTATTGTT
          1 GAAATCAGCATGACGGGTATTGTT

        568 TGATCCTCCC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29


Consensus pattern (24 bp):   
GAAATCAGCATGACGGGTATTGTT
Done.