Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009115.1 Corchorus olitorius cultivar O-4 contig09143, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 608

Length: 1014
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.36


Found at i:158 original size:22 final size:21

Alignment explanation


    Indices: 123--174  Score: 70
    Period size: 22  Copynumber: 2.5  Consensus size: 21

        113 TCCGTTGACG

                             *   
        123 AAATAAT-AAAATAAAAGGAT
          1 AAATAATAAAAATAAAACGAT

              *                   
        143 AATTAAATAAAAATAAAACGAT
          1 AAAT-AATAAAAATAAAACGAT

                      
        165 AAATAATAAA
          1 AAATAATAAA

        175 GATTCTTTTT


Statistics
Matches: 27,  Mismatches: 3, Indels: 3
        0.82            0.09        0.09

Matches are distributed among these distances:
  20    3  0.11
  21    9  0.33
  22   15  0.56

ACGTcount: A:0.71, C:0.02, G:0.06, T:0.21


Consensus pattern (21 bp):   
AAATAATAAAAATAAAACGAT
Done.