Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009122.1 Corchorus olitorius cultivar O-4 contig09150, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1013
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33


Found at i:508 original size:21 final size:21

Alignment explanation


    Indices: 484--533  Score: 73
    Period size: 21  Copynumber: 2.4  Consensus size: 21

        474 CTTAGGCAAT

                                 
        484 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGAAACCTTC

                    **   *       
        505 TCCAATGATTTTGGAACCTTC
          1 TCCAATGAGCTTGAAACCTTC

                    
        526 TCCAATGA
          1 TCCAATGA

        534 ACTTCTAGCA


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   26  1.00

ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32


Consensus pattern (21 bp):   
TCCAATGAGCTTGAAACCTTC

Found at i:922 original size:154 final size:154

Alignment explanation


    Indices: 642--1013  Score: 582
    Period size: 154  Copynumber: 2.4  Consensus size: 154

        632 GCGCATCACT

                                        *                                *   
        642 AACTATAATCATTTTGGTGAGATTAGTCTACTGTGAAGTTTTTAGCTCATTTGGAACACTTATTA
          1 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTA

             *         *                                  *    *  **         
        707 TTTTGGGCCTATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGGTTTGTCATCCCTCAATGC
         66 TATTGGGCCTAACGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGC

                                    
        772 TTTTCTTTCCATTGTTTATGGCCG
        131 TTTTCTTTCCATTGTTTATGGCCG

                      *       *             *           *  *          *      
        796 AACTATAATCGTTTTGGTAAGATTAGTCCACTTTGAAGTTTTTATCTAATTTGGAACATTTGTTA
          1 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTA

                          *           **                                     
        861 TATTGGGCCTAACGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGC
         66 TATTGGGCCTAACGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGC

                                   *
        926 TTTTCTTTCCATTGTTTATGGCCT
        131 TTTTCTTTCCATTGTTTATGGCCG

                                                                            
        950 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTT
          1 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTT


Statistics
Matches: 194,  Mismatches: 24, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
 154  194  1.00

ACGTcount: A:0.22, C:0.18, G:0.19, T:0.41


Consensus pattern (154 bp):   
AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTA
TATTGGGCCTAACGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGC
TTTTCTTTCCATTGTTTATGGCCG
Done.