Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009142.1 Corchorus olitorius cultivar O-4 contig09170, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 841

Length: 1403
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28


Found at i:1333 original size:13 final size:13

Alignment explanation


    Indices: 1315--1340  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       1305 CTTTCACAAA

                         
       1315 ATTATCAACTAAT
          1 ATTATCAACTAAT

                         
       1328 ATTATCAACTAAT
          1 ATTATCAACTAAT

       1341 CATAATGGTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38


Consensus pattern (13 bp):   
ATTATCAACTAAT
Done.