Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009143.1 Corchorus olitorius cultivar O-4 contig09171, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 927

Length: 1546
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34


Found at i:514 original size:21 final size:20

Alignment explanation


    Indices: 464--514  Score: 50
    Period size: 21  Copynumber: 2.4  Consensus size: 20

        454 AAGACACAGC

                      *          
        464 CCATCTGGGTTCTCAAGCAAA
          1 CCAT-TGGGTGCTCAAGCAAA

                                  
        485 CCACTTGGGTGCTCAAGGC-AA
          1 CCA-TTGGGTGCTCAA-GCAAA

                     
        506 CCATGTGGG
          1 CCAT-TGGG

        515 CGCCTAGGTG


Statistics
Matches: 26,  Mismatches: 1, Indels: 6
        0.79            0.03        0.18

Matches are distributed among these distances:
  20    1  0.04
  21   22  0.85
  22    3  0.12

ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22


Consensus pattern (20 bp):   
CCATTGGGTGCTCAAGCAAA
Done.