Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009144.1 Corchorus olitorius cultivar O-4 contig09172, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 866

Length: 1444
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30


Found at i:597 original size:15 final size:15

Alignment explanation


    Indices: 577--606  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        567 AAAGGAAGTG

                           
        577 ATTTAGACAAAAAGA
          1 ATTTAGACAAAAAGA

                           
        592 ATTTAGACAAAAAGA
          1 ATTTAGACAAAAAGA

        607 GAAGCAACTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.60, C:0.07, G:0.13, T:0.20


Consensus pattern (15 bp):   
ATTTAGACAAAAAGA

Found at i:661 original size:24 final size:21

Alignment explanation


    Indices: 597--648  Score: 86
    Period size: 21  Copynumber: 2.5  Consensus size: 21

        587 AAAGAATTTA

                          *      
        597 GACAAAAAGAGAAGCAACTTG
          1 GACAAAAAGAGAAGTAACTTG

              *                  
        618 GATAAAAAGAGAAGTAACTTG
          1 GACAAAAAGAGAAGTAACTTG

                      
        639 GACAAAAAGA
          1 GACAAAAAGA

        649 AACGAAGTGA


Statistics
Matches: 28,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   28  1.00

ACGTcount: A:0.56, C:0.10, G:0.23, T:0.12


Consensus pattern (21 bp):   
GACAAAAAGAGAAGTAACTTG
Done.