Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009146.1 Corchorus olitorius cultivar O-4 contig09174, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1020
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36


Found at i:86 original size:17 final size:17

Alignment explanation


    Indices: 61--96  Score: 63
    Period size: 17  Copynumber: 2.1  Consensus size: 17

         51 ATTTATCCTT

                *            
         61 ATGGGGTTTTGTATAGA
          1 ATGGAGTTTTGTATAGA

                             
         78 ATGGAGTTTTGTATAGA
          1 ATGGAGTTTTGTATAGA

              
         95 AT
          1 AT

         97 ACCAAAAAAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.28, C:0.00, G:0.31, T:0.42


Consensus pattern (17 bp):   
ATGGAGTTTTGTATAGA

Found at i:341 original size:13 final size:13

Alignment explanation


    Indices: 323--348  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        313 TTTTACCCAC

                         
        323 TTTTATTTTTTTA
          1 TTTTATTTTTTTA

                         
        336 TTTTATTTTTTTA
          1 TTTTATTTTTTTA

        349 GTAGAATATT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85


Consensus pattern (13 bp):   
TTTTATTTTTTTA
Done.