Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009147.1 Corchorus olitorius cultivar O-4 contig09175, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1731
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36


Found at i:614 original size:32 final size:32

Alignment explanation


    Indices: 578--643  Score: 132
    Period size: 32  Copynumber: 2.1  Consensus size: 32

        568 TATATAATAG

                                            
        578 TATATTCAATTATATGTCTAGTATTTAATAAT
          1 TATATTCAATTATATGTCTAGTATTTAATAAT

                                            
        610 TATATTCAATTATATGTCTAGTATTTAATAAT
          1 TATATTCAATTATATGTCTAGTATTTAATAAT

              
        642 TA
          1 TA

        644 ATCAATAATA


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   34  1.00

ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50


Consensus pattern (32 bp):   
TATATTCAATTATATGTCTAGTATTTAATAAT
Done.