Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009182.1 Corchorus olitorius cultivar O-4 contig09210, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 680

Length: 1134
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40


Found at i:421 original size:154 final size:154

Alignment explanation


    Indices: 1--1129  Score: 1604
    Period size: 154  Copynumber: 7.3  Consensus size: 154

                    *               *        *            *                 *
          1 AACCTCAATGCTTTTCTTTCCATTATTTATGGCGTAACTATAATCAATTT-GATGAGATTAGTCT
          1 AACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGA-GAGATTAGTCC

                                                        *                    
         65 ACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCTTATCGGGGCCCATTAGTTCC
         65 ACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCC

                                  *  
        130 GTTTTGAATCGTCTTCGATTTGCCA
        130 GTTTTGAATCGTCTTCGATTTGGCA

                    *       *                *                   *           
        155 AACCTCAATGCTTTTTTTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCC
          1 AACCTCAAAGC-TTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGAGAGATTAGTCC

                     *                                *                      
        220 ACTGTGAAGATTTTAGCTCATTTGGAACACTTGTTATTTTGGACCTATCGGGGCCCATTAGTTCC
         65 ACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCC

                                     
        285 GTTTTGAATCGTCTTCGATTTGGCA
        130 GTTTTGAATCGTCTTCGATTTGGCA

                    *      *        *       *      *                     *   
        310 AACCTCAATGCTTTTATTTCCATTATTTATGGACTAACTGTAATCATTTTGGAGAGATTAGACCA
          1 AACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGAGAGATTAGTCCA

                  *         *  *                            *      *     **  
        375 CTGTGATGTTTTTAGCACAATTGGAACACTTGTTATTTTGGGCCTATCTGGGCCCCTTAGTGACG
         66 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCG

                       *            
        440 TTTTGAATCGTTTTCGATTTGGCA
        131 TTTTGAATCGTCTTCGATTTGGCA

                                *                           *                
        464 AACCTCAAAGCTTTTCTTT-AAGTTGTTTATGGCCTAACTATAATCA-ATTGGATGAGATTAGTC
          1 AACCTCAAAGCTTTTCTTTCCA-TTGTTTATGGCCTAACTATAATCATTTTGGA-GAGATTAGTC

                        **                       *     *       *             
        527 CACTGTGAAGTTCGTAGCTCATTTGGAACACTTGTTAATTTGGTCCTATCGAGGCCCATTAGTTC
         64 CACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTC

                                      
        592 CGTTTTGAATCGTCTTCGATTTGGCA
        129 CGTTTTGAATCGTCTTCGATTTGGCA

                                                        * *     *            
        618 AACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATAAATTTGGTGAGATTAGTCCA
          1 AACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGAGAGATTAGTCCA

                     ***             *                              *    **  
        683 CTGTGAAGTACATAGCTCATTTGGATCACTTGTTATTTTGGGCCTATCGGGGCCCAATAGTGACG
         66 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCG

                                    
        748 TTTTGAATCGTCTTCGATTTGGCA
        131 TTTTGAATCGTCTTCGATTTGGCA

                *   *                       *                   *            
        772 AACCCCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCA
          1 AACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGAGAGATTAGTCCA

                                                             *               
        837 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGTGGCCCATTAGTTCCG
         66 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCG

                                  * 
        902 TTTTGAATCGTCTTCGATTTGGTA
        131 TTTTGAATCGTCTTCGATTTGGCA

                 *    *        ***                          *                
        926 AACCTGAAAGTTTTTCTTTATGTTGTTTATGGCCTAACTATAATCATTAT-GATGAGATTAGTCC
          1 AACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGA-GAGATTAGTCC

                                                                          ** 
        990 ACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGAC
         65 ACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCC

                        *    *       
       1055 GTTTTGAATCGTTTTCGTTTTGGCA
        130 GTTTTGAATCGTCTTCGATTTGGCA

               *                *                               
       1080 AACGTCAAAGCTTTTC-TT-AAGTTGTTTATGGCCTAACTATAATCATTTTG
          1 AACCTCAAAGCTTTTCTTTCCA-TTGTTTATGGCCTAACTATAATCATTTTG

       1130 ATGAG


Statistics
Matches: 870,  Mismatches: 96, Indels: 18
        0.88            0.10        0.02

Matches are distributed among these distances:
 153   36  0.04
 154  687  0.79
 155  146  0.17
 156    1  0.00

ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40


Consensus pattern (154 bp):   
AACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGAGAGATTAGTCCA
CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCG
TTTTGAATCGTCTTCGATTTGGCA

Done.