Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009188.1 Corchorus olitorius cultivar O-4 contig09216, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 678

Length: 1131
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32


Found at i:448 original size:21 final size:21

Alignment explanation


    Indices: 422--464  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        412 TCTCTAATAG

                                 
        422 ACGTAGTGCTGGTTTTGTTGA
          1 ACGTAGTGCTGGTTTTGTTGA

                                 
        443 ACGTAGTGCTGGTTTTGTTGA
          1 ACGTAGTGCTGGTTTTGTTGA

             
        464 A
          1 A

        465 TGGATTTTTG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.16, C:0.09, G:0.33, T:0.42


Consensus pattern (21 bp):   
ACGTAGTGCTGGTTTTGTTGA
Done.