Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009190.1 Corchorus olitorius cultivar O-4 contig09218, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 930

Length: 1551
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:27 original size:18 final size:18

Alignment explanation


    Indices: 1--40  Score: 62
    Period size: 18  Copynumber: 2.2  Consensus size: 18

                *             
          1 ACTATCATCAATAGCGTC
          1 ACTAGCATCAATAGCGTC

                         *    
         19 ACTAGCATCAATATCGTC
          1 ACTAGCATCAATAGCGTC

                
         37 ACTA
          1 ACTA

         41 TCACTATCAT


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.35, C:0.28, G:0.10, T:0.28


Consensus pattern (18 bp):   
ACTAGCATCAATAGCGTC

Found at i:1213 original size:21 final size:21

Alignment explanation


    Indices: 1189--1252  Score: 128
    Period size: 21  Copynumber: 3.0  Consensus size: 21

       1179 GGAACCATGG

                                 
       1189 CATATATGTTTGGAATAGATT
          1 CATATATGTTTGGAATAGATT

                                 
       1210 CATATATGTTTGGAATAGATT
          1 CATATATGTTTGGAATAGATT

                                 
       1231 CATATATGTTTGGAATAGATT
          1 CATATATGTTTGGAATAGATT

             
       1252 C
          1 C

       1253 CGTTTTGAGA


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   43  1.00

ACGTcount: A:0.33, C:0.06, G:0.19, T:0.42


Consensus pattern (21 bp):   
CATATATGTTTGGAATAGATT
Done.