Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009211.1 Corchorus olitorius cultivar O-4 contig09239, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 830

Length: 1384
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37


Found at i:981 original size:19 final size:19

Alignment explanation


    Indices: 957--996  Score: 62
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        947 GCTTTTTACT

                    *      *   
        957 TTATTTTATAAATTTCTAA
          1 TTATTTTAGAAATTTATAA

                               
        976 TTATTTTAGAAATTTATAA
          1 TTATTTTAGAAATTTATAA

              
        995 TT
          1 TT

        997 TCTGGATTAT


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57


Consensus pattern (19 bp):   
TTATTTTAGAAATTTATAA

Found at i:1070 original size:13 final size:14

Alignment explanation


    Indices: 1032--1074  Score: 77
    Period size: 14  Copynumber: 3.1  Consensus size: 14

       1022 TATATGATAT

                 *        
       1032 ATGATAATTTTTGA
          1 ATGATGATTTTTGA

                          
       1046 ATGATGATTTTTGA
          1 ATGATGATTTTTGA

                          
       1060 ATGATGATTTTTGA
          1 ATGATGATTTTTGA

             
       1074 A
          1 A

       1075 CTTTCCATAT


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  14   28  1.00

ACGTcount: A:0.33, C:0.00, G:0.19, T:0.49


Consensus pattern (14 bp):   
ATGATGATTTTTGA
Done.