Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009215.1 Corchorus olitorius cultivar O-4 contig09243, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 729

Length: 1215
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29


Found at i:1186 original size:15 final size:15

Alignment explanation


    Indices: 1166--1196  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1156 AAGATCCCCC

                           
       1166 TATTAAAAATAGGAT
          1 TATTAAAAATAGGAT

                           
       1181 TATTAAAAATAGGAT
          1 TATTAAAAATAGGAT

             
       1196 T
          1 T

       1197 TCTCAGATAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.52, C:0.00, G:0.13, T:0.35


Consensus pattern (15 bp):   
TATTAAAAATAGGAT
Done.