Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009220.1 Corchorus olitorius cultivar O-4 contig09248, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 835

Length: 1392
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30


Found at i:1348 original size:23 final size:24

Alignment explanation


    Indices: 1318--1365  Score: 89
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1308 GGTATCAAGA

                                    
       1318 ACTGAGTC-GTTTTCTTCTTGACT
          1 ACTGAGTCAGTTTTCTTCTTGACT

                                    
       1341 ACTGAGTCAGTTTTCTTCTTGACT
          1 ACTGAGTCAGTTTTCTTCTTGACT

             
       1365 A
          1 A

       1366 TGGTTTTAGT


Statistics
Matches: 24,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  23    8  0.33
  24   16  0.67

ACGTcount: A:0.17, C:0.21, G:0.17, T:0.46


Consensus pattern (24 bp):   
ACTGAGTCAGTTTTCTTCTTGACT

Done.