Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009221.1 Corchorus olitorius cultivar O-4 contig09249, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 655

Length: 1092
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.27


Found at i:31 original size:20 final size:20

Alignment explanation


    Indices: 6--46  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

          1 CCCCA

                                
          6 AAAACAGTCTTATTATTATT
          1 AAAACAGTCTTATTATTATT

                                
         26 AAAACAGTCTTATTATTATT
          1 AAAACAGTCTTATTATTATT

             
         46 A
          1 A

         47 CCAGAATCAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44


Consensus pattern (20 bp):   
AAAACAGTCTTATTATTATT
Done.