Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009223.1 Corchorus olitorius cultivar O-4 contig09251, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 712

Length: 1187
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29


Found at i:1140 original size:25 final size:25

Alignment explanation


    Indices: 1111--1161  Score: 93
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       1101 TGGGGCTAGT

                                     
       1111 TATAAATAGCTTATCTTTCATACGA
          1 TATAAATAGCTTATCTTTCATACGA

                     *               
       1136 TATAAATAGTTTATCTTTCATACGA
          1 TATAAATAGCTTATCTTTCATACGA

             
       1161 T
          1 T

       1162 CTGGCTCTTT


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.35, C:0.14, G:0.08, T:0.43


Consensus pattern (25 bp):   
TATAAATAGCTTATCTTTCATACGA
Done.