Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009228.1 Corchorus olitorius cultivar O-4 contig09256, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 687

Length: 1146
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26


Found at i:314 original size:18 final size:18

Alignment explanation


    Indices: 291--326  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        281 CGTAGGAATG

                              
        291 GGCGCAGTGGTGCACGTA
          1 GGCGCAGTGGTGCACGTA

                              
        309 GGCGCAGTGGTGCACGTA
          1 GGCGCAGTGGTGCACGTA

        327 AAAGTACACG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.17, C:0.22, G:0.44, T:0.17


Consensus pattern (18 bp):   
GGCGCAGTGGTGCACGTA
Done.