Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000923.1 Corchorus olitorius cultivar O-4 contig00923, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 666

Length: 1110
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.36


Found at i:172 original size:14 final size:14

Alignment explanation


    Indices: 150--182  Score: 57
    Period size: 14  Copynumber: 2.4  Consensus size: 14

        140 TTTTAAATTC

                          
        150 AAATAGTAAAAATA
          1 AAATAGTAAAAATA

                *         
        164 AAATGGTAAAAATA
          1 AAATAGTAAAAATA

                 
        178 AAATA
          1 AAATA

        183 ATTATAAAAA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21


Consensus pattern (14 bp):   
AAATAGTAAAAATA
Done.