Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009239.1 Corchorus olitorius cultivar O-4 contig09267, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 780

Length: 1301
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:1042 original size:14 final size:14

Alignment explanation


    Indices: 1023--1049  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

       1013 AAGAAATATT

                          
       1023 ACTTATTACTCATC
          1 ACTTATTACTCATC

                         
       1037 ACTTATTACTCAT
          1 ACTTATTACTCAT

       1050 AAAGAGTCTC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.30, C:0.26, G:0.00, T:0.44


Consensus pattern (14 bp):   
ACTTATTACTCATC
Done.