Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000924.1 Corchorus olitorius cultivar O-4 contig00924, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 921

Length: 1535
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.37


Found at i:720 original size:31 final size:32

Alignment explanation


    Indices: 685--747  Score: 101
    Period size: 31  Copynumber: 2.0  Consensus size: 32

        675 GCTAAATATC

                                            
        685 CAAAAAAATCCCTTATGTT-TTTCTTTTGGGA
          1 CAAAAAAATCCCTTATGTTCTTTCTTTTGGGA

                 *                 *        
        716 CAAAATAATCCCTTATGTTCTTTTTTTTGGGA
          1 CAAAAAAATCCCTTATGTTCTTTCTTTTGGGA

        748 TAAATTAATC


Statistics
Matches: 29,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
  31   18  0.62
  32   11  0.38

ACGTcount: A:0.27, C:0.16, G:0.13, T:0.44


Consensus pattern (32 bp):   
CAAAAAAATCCCTTATGTTCTTTCTTTTGGGA

Found at i:757 original size:32 final size:31

Alignment explanation


    Indices: 685--767  Score: 103
    Period size: 32  Copynumber: 2.6  Consensus size: 31

        675 GCTAAATATC

                 *                         
        685 CAAAAAAATCCCTTATGTTTTTCTTTTGGGA
          1 CAAAATAATCCCTTATGTTTTTCTTTTGGGA

                                   *        
        716 CAAAATAATCCCTTATGTTCTTTTTTTTGGGA
          1 CAAAATAATCCCTTATGTT-TTTCTTTTGGGA

            *   *     *    *    
        748 TAAATTAATCTCTTACGTTT
          1 CAAAATAATCCCTTATGTTT

        768 CAAAAAGTGA


Statistics
Matches: 45,  Mismatches: 6, Indels: 2
        0.85            0.11        0.04

Matches are distributed among these distances:
  31   19  0.42
  32   26  0.58

ACGTcount: A:0.28, C:0.16, G:0.11, T:0.46


Consensus pattern (31 bp):   
CAAAATAATCCCTTATGTTTTTCTTTTGGGA
Done.