Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009241.1 Corchorus olitorius cultivar O-4 contig09269, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 924

Length: 1541
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26


Found at i:620 original size:24 final size:24

Alignment explanation


    Indices: 588--635  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        578 GGGAGTGGGA

                                    
        588 CTGATTGAACTATTACAGCAATAT
          1 CTGATTGAACTATTACAGCAATAT

                                    
        612 CTGATTGAACTATTACAGCAATAT
          1 CTGATTGAACTATTACAGCAATAT

        636 ATAGTAGAAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33


Consensus pattern (24 bp):   
CTGATTGAACTATTACAGCAATAT
Done.