Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009249.1 Corchorus olitorius cultivar O-4 contig09277, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 699

Length: 1165
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33


Found at i:455 original size:21 final size:21

Alignment explanation


    Indices: 429--513  Score: 170
    Period size: 21  Copynumber: 4.0  Consensus size: 21

        419 AATATACTTA

                                 
        429 TTCGATCTAATAAGTATCTTG
          1 TTCGATCTAATAAGTATCTTG

                                 
        450 TTCGATCTAATAAGTATCTTG
          1 TTCGATCTAATAAGTATCTTG

                                 
        471 TTCGATCTAATAAGTATCTTG
          1 TTCGATCTAATAAGTATCTTG

                                 
        492 TTCGATCTAATAAGTATCTTG
          1 TTCGATCTAATAAGTATCTTG

             
        513 T
          1 T

        514 ATCAGAATTT


Statistics
Matches: 64,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   64  1.00

ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44


Consensus pattern (21 bp):   
TTCGATCTAATAAGTATCTTG

Done.