Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009263.1 Corchorus olitorius cultivar O-4 contig09292, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 669

Length: 1116
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:43 original size:22 final size:22

Alignment explanation


    Indices: 15--56  Score: 84
    Period size: 22  Copynumber: 1.9  Consensus size: 22

          5 GACTGCCCAT

                                  
         15 CAATATCTCATCTGTTCTTTTC
          1 CAATATCTCATCTGTTCTTTTC

                                
         37 CAATATCTCATCTGTTCTTT
          1 CAATATCTCATCTGTTCTTT

         57 GCCGATGATT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   20  1.00

ACGTcount: A:0.19, C:0.26, G:0.05, T:0.50


Consensus pattern (22 bp):   
CAATATCTCATCTGTTCTTTTC
Done.